J4_6Y69_012

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6Y69|1|a|C|183, 6Y69|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Y69_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1605

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6Y69|1|a|G|142
6Y69|1|a|A|143
6Y69|1|a|G|144
*
6Y69|1|a|C|178
6Y69|1|a|A|179
6Y69|1|a|U|180
6Y69|1|a|A|181
6Y69|1|a|A|182
6Y69|1|a|C|183
6Y69|1|a|G|184
*
6Y69|1|a|C|193
6Y69|1|a|C|194
6Y69|1|a|A|195
6Y69|1|a|A|196
6Y69|1|a|A|197
6Y69|1|a|G|198
*
6Y69|1|a|U|219
6Y69|1|a|G|220
6Y69|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20