3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
6Y6X|1|L5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6Y6X_005 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.0742
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|G|2406
6Y6X|1|L5|G|2407
6Y6X|1|L5|U|2408
6Y6X|1|L5|U|2409
6Y6X|1|L5|C|2410
*
6Y6X|1|L5|G|2434
6Y6X|1|L5|G|2435
6Y6X|1|L5|U|2436
6Y6X|1|L5|C|2437
6Y6X|1|L5|A|2438
6Y6X|1|L5|G|2439
*
6Y6X|1|L5|U|2538
6Y6X|1|L5|C|2539
*
6Y6X|1|L5|G|2777
6Y6X|1|L5|G|2778
6Y6X|1|L5|C|2779
6Y6X|1|L5|C|2780
6Y6X|1|L5|G|2781
6Y6X|1|L5|U|2782
6Y6X|1|L5|A|2783
6Y6X|1|L5|C|2784

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LR
60S ribosomal protein L19
Chain LX
60S ribosomal protein L23a
Chain Lg
60S ribosomal protein L34
Chain Lh
60S ribosomal protein L35
Chain Lj
60S ribosomal protein L37
Chain Lk
60S ribosomal protein L38
Chain Ll
60S ribosomal protein L39

Coloring options:


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