3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GACUG*CAAAG*UGAUU*AUGAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6Y6X_007 not in the Motif Atlas
Homologous match to J4_8C3A_006
Geometric discrepancy: 0.0856
The information below is about J4_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|G|3634
6Y6X|1|L5|A|3635
6Y6X|1|L5|C|3636
6Y6X|1|L5|U|3637
6Y6X|1|L5|G|3638
*
6Y6X|1|L5|C|3650
6Y6X|1|L5|A|3651
6Y6X|1|L5|A|3652
6Y6X|1|L5|A|3653
6Y6X|1|L5|G|3654
*
6Y6X|1|L5|U|3690
6Y6X|1|L5|G|3691
6Y6X|1|L5|A|3692
6Y6X|1|L5|U|3693
6Y6X|1|L5|U|3694
*
6Y6X|1|L5|A|3821
6Y6X|1|L5|U|3822
6Y6X|1|L5|G|3823
6Y6X|1|L5|A|3824
6Y6X|1|L5|A|3825
6Y6X|1|L5|C|3826

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a

Coloring options:


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