J4_6YAN_003
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6YAN|1|2|A|662, 6YAN|1|2|A|1079, 6YAN|1|2|C|1081, 6YAN|1|2|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YAN_003 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1055
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YAN|1|2|A|661
6YAN|1|2|A|662
6YAN|1|2|G|663
*
6YAN|1|2|C|1028
6YAN|1|2|G|1029
6YAN|1|2|A|1030
6YAN|1|2|A|1031
6YAN|1|2|A|1032
6YAN|1|2|G|1033
*
6YAN|1|2|C|1074
6YAN|1|2|C|1075
6YAN|1|2|A|1076
6YAN|1|2|U|1077
6YAN|1|2|A|1078
6YAN|1|2|A|1079
6YAN|1|2|A|1080
6YAN|1|2|C|1081
6YAN|1|2|G|1082
6YAN|1|2|A|1083
6YAN|1|2|U|1084
6YAN|1|2|G|1085
*
6YAN|1|2|U|1156
6YAN|1|2|U|1157
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein S11
- Chain P
- ribosomal protein uS15
- Chain Q
- 40S ribosomal protein uS11
- Chain Y
- Ribosomal protein S15a
- Chain Z
- 40S ribosomal protein uS12
- Chain b
- 40S ribosomal protein eS26
- Chain l
- 60s ribosomal protein l41
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