J4_6YDP_001
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CGCCCCGG*CAC*GAAACAG
- Length
- 22 nucleotides
- Bulged bases
- 6YDP|1|AA|C|171
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|AA|C|52
6YDP|1|AA|A|53
6YDP|1|AA|A|54
6YDP|1|AA|G|55
*
6YDP|1|AA|C|62
6YDP|1|AA|G|63
6YDP|1|AA|C|64
6YDP|1|AA|C|65
6YDP|1|AA|C|66
6YDP|1|AA|C|67
6YDP|1|AA|G|68
6YDP|1|AA|G|69
*
6YDP|1|AA|C|156
6YDP|1|AA|A|157
6YDP|1|AA|C|158
*
6YDP|1|AA|G|167
6YDP|1|AA|A|168
6YDP|1|AA|A|169
6YDP|1|AA|A|170
6YDP|1|AA|C|171
6YDP|1|AA|A|172
6YDP|1|AA|G|173
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AP
- 28S ribosomal protein S16, mitochondrial
- Chain Ad
- Mitochondrial ribosomal protein S26
- Chain Aj
- mS34
- Chain BO
- uL14m
- Chain BT
- Mitochondrial ribosomal protein L19
Coloring options: