J4_6YDP_002

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGAAUG*CAG*CUUG*CC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|G|71
6YDP|1|AA|A|72
6YDP|1|AA|G|73
6YDP|1|AA|A|74
6YDP|1|AA|A|75
6YDP|1|AA|U|76
6YDP|1|AA|G|77
*
6YDP|1|AA|C|106
6YDP|1|AA|A|107
6YDP|1|AA|G|108
*
6YDP|1|AA|C|144
6YDP|1|AA|U|145
6YDP|1|AA|U|146
6YDP|1|AA|G|147
*
6YDP|1|AA|C|153
6YDP|1|AA|C|154

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AP

28S ribosomal protein S16, mitochondrial

Chain AQ

uS17m

Chain Aj

mS34