J4_6YDP_004
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCA*UAU*AAAAUGUUG*CUUCC
- Length
- 21 nucleotides
- Bulged bases
- 6YDP|1|AV|U|8, 6YDP|1|AV|U|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|AV|G|7
6YDP|1|AV|U|8
6YDP|1|AV|C|9
6YDP|1|AV|A|10
*
6YDP|1|AV|U|22
6YDP|1|AV|A|23
6YDP|1|AV|U|24
*
6YDP|1|AV|A|40
6YDP|1|AV|A|41
6YDP|1|AV|A|42
6YDP|1|AV|A|43
6YDP|1|AV|U|44
6YDP|1|AV|G|45
6YDP|1|AV|U|46
6YDP|1|AV|U|47
6YDP|1|AV|G|48
*
6YDP|1|AV|C|57
6YDP|1|AV|U|58
6YDP|1|AV|U|59
6YDP|1|AV|C|60
6YDP|1|AV|C|61
Current chains
- Chain AV
- fMet-tRNAMet (P site)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- Elongation factor G, mitochondrial
- Chain BQ
- uL16m
- Chain Bd
- Uncharacterized protein
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
Coloring options: