J4_6YDP_005

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

6YDP|1|BA|A|650, 6YDP|1|BA|A|783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|C|648
6YDP|1|BA|A|649
6YDP|1|BA|A|650
6YDP|1|BA|G|651
*
6YDP|1|BA|C|660
6YDP|1|BA|U|661
*
6YDP|1|BA|A|781
6YDP|1|BA|A|782
6YDP|1|BA|A|783
6YDP|1|BA|G|784
*
6YDP|1|BA|C|1003
6YDP|1|BA|A|1004
6YDP|1|BA|G|1005

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

bL32m

Chain BR

Uncharacterized protein

Chain BW

uL22m

Chain Bw

39S ribosomal protein S30, mitochondrial