J4_6YDP_006
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACGCUUACA*UAAUUAAC*GUUAACC*GAG
- Length
- 28 nucleotides
- Bulged bases
- 6YDP|1|BA|U|705, 6YDP|1|BA|A|707, 6YDP|1|BA|A|757
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|BA|C|669
6YDP|1|BA|A|670
6YDP|1|BA|C|671
6YDP|1|BA|G|672
6YDP|1|BA|C|673
6YDP|1|BA|U|674
6YDP|1|BA|U|675
6YDP|1|BA|A|676
6YDP|1|BA|C|677
6YDP|1|BA|A|678
*
6YDP|1|BA|U|701
6YDP|1|BA|A|702
6YDP|1|BA|A|703
6YDP|1|BA|U|704
6YDP|1|BA|U|705
6YDP|1|BA|A|706
6YDP|1|BA|A|707
6YDP|1|BA|C|708
*
6YDP|1|BA|G|753
6YDP|1|BA|U|754
6YDP|1|BA|U|755
6YDP|1|BA|A|756
6YDP|1|BA|A|757
6YDP|1|BA|C|758
6YDP|1|BA|C|759
*
6YDP|1|BA|G|768
6YDP|1|BA|A|769
6YDP|1|BA|G|770
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B2
- Mitochondrial ribosomal protein L47
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BX
- uL23m
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bw
- 39S ribosomal protein S30, mitochondrial
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