J4_6YDP_007

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|G|824
6YDP|1|BA|C|825
6YDP|1|BA|C|826
6YDP|1|BA|U|827
6YDP|1|BA|G|828
*
6YDP|1|BA|C|840
6YDP|1|BA|A|841
6YDP|1|BA|U|842
6YDP|1|BA|C|843
6YDP|1|BA|A|844
6YDP|1|BA|C|845
*
6YDP|1|BA|G|869
6YDP|1|BA|C|870
6YDP|1|BA|A|871
6YDP|1|BA|A|872
6YDP|1|BA|U|873
6YDP|1|BA|G|874
*
6YDP|1|BA|C|969
6YDP|1|BA|C|970
6YDP|1|BA|A|971
6YDP|1|BA|C|972
6YDP|1|BA|A|973
6YDP|1|BA|C|974

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

Aurora kinase A interacting protein 1

Chain BD

uL2m