J4_6YDP_010
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAG*CAA*UAGAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 6YDP|1|BB|U|8, 6YDP|1|BB|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YDP_010 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.5267
- The information below is about J4_7UQ6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6YDP|1|BB|G|7
6YDP|1|BB|U|8
6YDP|1|BB|A|9
6YDP|1|BB|G|10
*
6YDP|1|BB|C|26
6YDP|1|BB|A|27
6YDP|1|BB|A|28
*
6YDP|1|BB|U|44
6YDP|1|BB|A|45
6YDP|1|BB|G|46
6YDP|1|BB|A|47
6YDP|1|BB|U|48
6YDP|1|BB|G|49
*
6YDP|1|BB|C|62
6YDP|1|BB|C|63
Current chains
- Chain BB
- CP tRNAPhe
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bd
- Uncharacterized protein
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
Coloring options: