J4_6YEF_010

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1292

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6YEF|1|A|G|2670
6YEF|1|A|A|2671
6YEF|1|A|G|2672
6YEF|1|A|C|2673
*
6YEF|1|A|G|2701
6YEF|1|A|A|2702
6YEF|1|A|C|2703
*
6YEF|1|A|G|2758
6YEF|1|A|G|2759
6YEF|1|A|A|2760
6YEF|1|A|C|2761
6YEF|1|A|G|2762
*
6YEF|1|A|C|2796
6YEF|1|A|C|2797
6YEF|1|A|C|2798

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14