J4_6YEF_014

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(4SU)GG*CGU*AAG(7MG)UCG*CC

Length

16 nucleotides

Bulged bases

6YEF|1|x|4SU|8, 6YEF|1|x|U|47, 6YEF|1|x|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YEF_014 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2364

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6YEF|1|x|G|7
6YEF|1|x|4SU|8
6YEF|1|x|G|9
6YEF|1|x|G|10
*
6YEF|1|x|C|25
6YEF|1|x|G|26
6YEF|1|x|U|27
*
6YEF|1|x|A|43
6YEF|1|x|A|44
6YEF|1|x|G|45
6YEF|1|x|7MG|46
6YEF|1|x|U|47
6YEF|1|x|C|48
6YEF|1|x|G|49
*
6YEF|1|x|C|65
6YEF|1|x|C|66

Current chains

Chain x

E-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16

Chain m

30S ribosomal protein S13