3D structure

PDB id
6YLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rix1-Rea1 pre-60S particle - full composite structure
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
6YLH|1|1|A|1452, 6YLH|1|1|U|1455, 6YLH|1|1|A|1456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6YLH_003 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.0936
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_87855.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6YLH|1|1|C|1451
6YLH|1|1|A|1452
6YLH|1|1|A|1453
6YLH|1|1|A|1454
6YLH|1|1|U|1455
6YLH|1|1|A|1456
6YLH|1|1|U|1457
*
6YLH|1|1|A|1475
6YLH|1|1|G|1476
*
6YLH|1|1|U|1877
6YLH|1|1|G|1878
6YLH|1|1|A|1879
6YLH|1|1|U|1880
*
6YLH|1|1|A|2352
6YLH|1|1|G|2353

Current chains

Chain 1
25S rRNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain b
Nucleolar GTP-binding protein 1
Chain d
60S ribosomal protein L31-A

Coloring options:


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