3D structure

PDB id
6YLX (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE1 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
6YLX|1|1|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6YLX_004 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.1104
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YLX|1|1|G|1492
6YLX|1|1|G|1493
6YLX|1|1|U|1494
6YLX|1|1|U|1495
6YLX|1|1|C|1496
*
6YLX|1|1|G|1520
6YLX|1|1|G|1521
6YLX|1|1|U|1522
6YLX|1|1|U|1523
6YLX|1|1|A|1524
6YLX|1|1|G|1525
*
6YLX|1|1|C|1614
6YLX|1|1|C|1615
*
6YLX|1|1|G|1829
6YLX|1|1|G|1830
6YLX|1|1|U|1831
6YLX|1|1|C|1832
6YLX|1|1|G|1833
6YLX|1|1|U|1834
6YLX|1|1|A|1835
6YLX|1|1|C|1836

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain R
60S ribosomal protein L19-A
Chain X
60S ribosomal protein L25
Chain g
60S ribosomal protein L34-A
Chain h
60S ribosomal protein L35-A
Chain j
60S ribosomal protein L37-A
Chain k
60S ribosomal protein L38
Chain l
60S ribosomal protein L39
Chain n
Pescadillo homolog

Coloring options:


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