J4_6YLY_003

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAUAUU*AAG*UGAU*AG

Length

17 nucleotides

Bulged bases

6YLY|1|1|A|1452, 6YLY|1|1|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLY|1|1|C|1451
6YLY|1|1|A|1452
6YLY|1|1|A|1453
6YLY|1|1|A|1454
6YLY|1|1|U|1455
6YLY|1|1|A|1456
6YLY|1|1|U|1457
6YLY|1|1|U|1458
*
6YLY|1|1|A|1474
6YLY|1|1|A|1475
6YLY|1|1|G|1476
*
6YLY|1|1|U|1877
6YLY|1|1|G|1878
6YLY|1|1|A|1879
6YLY|1|1|U|1880
*
6YLY|1|1|A|2352
6YLY|1|1|G|2353

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A