J4_6YPU_003
3D structure
- PDB id
- 6YPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6YPU|1|2|C|573, 6YPU|1|2|A|812, 6YPU|1|2|C|814, 6YPU|1|2|A|816
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YPU_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0696
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YPU|1|2|G|572
6YPU|1|2|C|573
6YPU|1|2|G|574
*
6YPU|1|2|C|761
6YPU|1|2|G|762
6YPU|1|2|A|763
6YPU|1|2|A|764
6YPU|1|2|A|765
6YPU|1|2|G|766
*
6YPU|1|2|C|807
6YPU|1|2|C|808
6YPU|1|2|G|809
6YPU|1|2|U|810
6YPU|1|2|A|811
6YPU|1|2|A|812
6YPU|1|2|A|813
6YPU|1|2|C|814
6YPU|1|2|G|815
6YPU|1|2|A|816
6YPU|1|2|U|817
6YPU|1|2|G|818
*
6YPU|1|2|C|876
6YPU|1|2|C|877
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
- Chain v
- 30S ribosomal protein S21
Coloring options: