J4_6YS3_001

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6YS3|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YS3_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1581

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6YS3|1|b|C|268
6YS3|1|b|C|269
*
6YS3|1|b|G|370
6YS3|1|b|A|371
6YS3|1|b|G|372
6YS3|1|b|U|373
6YS3|1|b|A|374
6YS3|1|b|G|375
*
6YS3|1|b|U|399
6YS3|1|b|G|400
6YS3|1|b|A|401
6YS3|1|b|A|402
6YS3|1|b|U|403
6YS3|1|b|A|404
6YS3|1|b|U|405
6YS3|1|b|G|406
*
6YS3|1|b|C|421
6YS3|1|b|A|422
6YS3|1|b|A|423
6YS3|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9