J4_6YS3_004
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6YS3|1|b|G|1273, 6YS3|1|b|A|1274, 6YS3|1|b|U|1275, 6YS3|1|b|U|1649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YS3_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.088
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|C|1272
6YS3|1|b|G|1273
6YS3|1|b|A|1274
6YS3|1|b|U|1275
6YS3|1|b|A|1276
6YS3|1|b|A|1277
6YS3|1|b|A|1278
*
6YS3|1|b|U|1296
6YS3|1|b|C|1297
*
6YS3|1|b|G|1647
6YS3|1|b|C|1648
6YS3|1|b|U|1649
6YS3|1|b|U|1650
*
6YS3|1|b|A|2013
6YS3|1|b|G|2014
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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