J4_6YS3_007

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GG*UU*AC*GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YS3_007 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.0924

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6YS3|1|b|G|1446
6YS3|1|b|G|1447
*
6YS3|1|b|U|1468
6YS3|1|b|U|1469
*
6YS3|1|b|A|1527
6YS3|1|b|C|1528
*
6YS3|1|b|G|1548
6YS3|1|b|C|1549

Current chains

Chain b

23S rRNA

Nearby chains