J4_6YS3_011
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YS3_011 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.1284
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6YS3|1|b|G|2647
6YS3|1|b|G|2648
6YS3|1|b|G|2649
6YS3|1|b|C|2650
*
6YS3|1|b|G|2678
6YS3|1|b|A|2679
6YS3|1|b|C|2680
*
6YS3|1|b|G|2735
6YS3|1|b|G|2736
6YS3|1|b|A|2737
6YS3|1|b|A|2738
6YS3|1|b|G|2739
*
6YS3|1|b|U|2773
6YS3|1|b|G|2774
6YS3|1|b|C|2775
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain k
- 50S ribosomal protein L14
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