J4_6YSI_001

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6YSI|1|1|U|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSI_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1072

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6YSI|1|1|C|268
6YSI|1|1|C|269
*
6YSI|1|1|G|362
6YSI|1|1|A|363
6YSI|1|1|G|364
6YSI|1|1|U|365
6YSI|1|1|A|366
6YSI|1|1|G|367
*
6YSI|1|1|U|391
6YSI|1|1|G|392
6YSI|1|1|A|393
6YSI|1|1|A|394
6YSI|1|1|U|395
6YSI|1|1|A|396
6YSI|1|1|U|397
6YSI|1|1|G|398
*
6YSI|1|1|C|413
6YSI|1|1|A|414
6YSI|1|1|A|415
6YSI|1|1|G|416

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L28