J4_6YSI_004
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGACAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6YSI|1|1|G|1259, 6YSI|1|1|A|1260, 6YSI|1|1|C|1261, 6YSI|1|1|U|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSI_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0967
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YSI|1|1|C|1258
6YSI|1|1|G|1259
6YSI|1|1|A|1260
6YSI|1|1|C|1261
6YSI|1|1|A|1262
6YSI|1|1|A|1263
6YSI|1|1|A|1264
*
6YSI|1|1|U|1282
6YSI|1|1|C|1283
*
6YSI|1|1|G|1636
6YSI|1|1|C|1637
6YSI|1|1|U|1638
6YSI|1|1|U|1639
*
6YSI|1|1|A|1998
6YSI|1|1|G|1999
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L17
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
Coloring options: