J4_6YSI_006
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6YSI|1|1|G|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSI_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0617
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|U|1301
6YSI|1|1|C|1302
*
6YSI|1|1|G|1326
6YSI|1|1|G|1327
6YSI|1|1|U|1328
6YSI|1|1|G|1329
6YSI|1|1|A|1330
6YSI|1|1|G|1331
*
6YSI|1|1|C|1392
6YSI|1|1|U|1393
*
6YSI|1|1|A|1588
6YSI|1|1|A|1589
6YSI|1|1|U|1590
6YSI|1|1|C|1591
6YSI|1|1|G|1592
6YSI|1|1|U|1593
6YSI|1|1|A|1594
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain P
- 50S ribosomal protein L23
Coloring options: