J4_6YSI_008
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6YSI|1|1|U|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6YSI_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1161
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|C|1822
6YSI|1|1|U|1823
6YSI|1|1|G|1824
*
6YSI|1|1|C|1894
6YSI|1|1|G|1895
*
6YSI|1|1|C|1913
6YSI|1|1|C|1914
6YSI|1|1|U|1915
6YSI|1|1|A|1916
6YSI|1|1|A|1917
6YSI|1|1|G|1918
6YSI|1|1|G|1919
6YSI|1|1|U|1920
6YSI|1|1|A|1921
6YSI|1|1|G|1922
*
6YSI|1|1|C|1956
6YSI|1|1|G|1957
6YSI|1|1|A|1958
6YSI|1|1|A|1959
6YSI|1|1|U|1960
6YSI|1|1|G|1961
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
Coloring options: