J4_6YSR_001

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6YSR|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSR_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1373

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6YSR|1|A|C|268
6YSR|1|A|C|269
*
6YSR|1|A|G|370
6YSR|1|A|A|371
6YSR|1|A|G|372
6YSR|1|A|U|373
6YSR|1|A|A|374
6YSR|1|A|G|375
*
6YSR|1|A|U|399
6YSR|1|A|G|400
6YSR|1|A|A|401
6YSR|1|A|A|402
6YSR|1|A|U|403
6YSR|1|A|A|404
6YSR|1|A|U|405
6YSR|1|A|G|406
*
6YSR|1|A|C|421
6YSR|1|A|A|422
6YSR|1|A|A|423
6YSR|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28