J4_6YSS_001

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6YSS|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1201

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6YSS|1|A|C|268
6YSS|1|A|C|269
*
6YSS|1|A|G|370
6YSS|1|A|A|371
6YSS|1|A|G|372
6YSS|1|A|U|373
6YSS|1|A|A|374
6YSS|1|A|G|375
*
6YSS|1|A|U|399
6YSS|1|A|G|400
6YSS|1|A|A|401
6YSS|1|A|A|402
6YSS|1|A|U|403
6YSS|1|A|A|404
6YSS|1|A|U|405
6YSS|1|A|G|406
*
6YSS|1|A|C|421
6YSS|1|A|A|422
6YSS|1|A|A|423
6YSS|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28