J4_6YSS_005

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6YSS|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSS_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0618

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6YSS|1|A|U|1313
6YSS|1|A|C|1314
*
6YSS|1|A|G|1338
6YSS|1|A|G|1339
6YSS|1|A|U|1340
6YSS|1|A|G|1341
6YSS|1|A|A|1342
6YSS|1|A|G|1343
*
6YSS|1|A|C|1404
6YSS|1|A|U|1405
*
6YSS|1|A|A|1597
6YSS|1|A|A|1598
6YSS|1|A|U|1599
6YSS|1|A|C|1600
6YSS|1|A|G|1601
6YSS|1|A|U|1602
6YSS|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23