J4_6YSS_011

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6YSS|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSS_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2786

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6YSS|1|a|G|115
6YSS|1|a|A|116
6YSS|1|a|G|117
6YSS|1|a|U|118
6YSS|1|a|A|119
6YSS|1|a|A|120
6YSS|1|a|U|121
6YSS|1|a|G|122
*
6YSS|1|a|U|239
6YSS|1|a|G|240
*
6YSS|1|a|C|286
6YSS|1|a|U|287
6YSS|1|a|A|288
6YSS|1|a|G|289
*
6YSS|1|a|C|311
6YSS|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17