J4_6YST_011

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6YST|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YST_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2208

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6YST|1|a|G|115
6YST|1|a|A|116
6YST|1|a|G|117
6YST|1|a|U|118
6YST|1|a|A|119
6YST|1|a|A|120
6YST|1|a|U|121
6YST|1|a|G|122
*
6YST|1|a|U|239
6YST|1|a|G|240
*
6YST|1|a|C|286
6YST|1|a|U|287
6YST|1|a|A|288
6YST|1|a|G|289
*
6YST|1|a|C|311
6YST|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17