J4_6YSU_001

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6YSU|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSU_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1536

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6YSU|1|A|C|268
6YSU|1|A|C|269
*
6YSU|1|A|G|370
6YSU|1|A|A|371
6YSU|1|A|G|372
6YSU|1|A|U|373
6YSU|1|A|A|374
6YSU|1|A|G|375
*
6YSU|1|A|U|399
6YSU|1|A|G|400
6YSU|1|A|A|401
6YSU|1|A|A|402
6YSU|1|A|U|403
6YSU|1|A|A|404
6YSU|1|A|U|405
6YSU|1|A|G|406
*
6YSU|1|A|C|421
6YSU|1|A|A|422
6YSU|1|A|A|423
6YSU|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28