J4_6YSU_005

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6YSU|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YSU_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1034

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6YSU|1|A|U|1313
6YSU|1|A|C|1314
*
6YSU|1|A|G|1338
6YSU|1|A|G|1339
6YSU|1|A|U|1340
6YSU|1|A|G|1341
6YSU|1|A|A|1342
6YSU|1|A|G|1343
*
6YSU|1|A|C|1404
6YSU|1|A|U|1405
*
6YSU|1|A|A|1597
6YSU|1|A|A|1598
6YSU|1|A|U|1599
6YSU|1|A|C|1600
6YSU|1|A|G|1601
6YSU|1|A|U|1602
6YSU|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23