J4_6YT9_001

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6YT9|1|2|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6YT9_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1702

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6YT9|1|2|G|111
6YT9|1|2|A|112
6YT9|1|2|G|113
6YT9|1|2|U|114
6YT9|1|2|A|115
6YT9|1|2|A|116
6YT9|1|2|U|117
6YT9|1|2|G|118
*
6YT9|1|2|U|235
6YT9|1|2|C|236
*
6YT9|1|2|G|282
6YT9|1|2|U|283
6YT9|1|2|A|284
6YT9|1|2|G|285
*
6YT9|1|2|C|307
6YT9|1|2|C|308

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17