J4_6Z1P_002

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGACA*UC*GAAG*UA

Length

14 nucleotides

Bulged bases

6Z1P|1|Ab|A|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Z1P_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.4099

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Ab|U|1145
6Z1P|1|Ab|A|1146
6Z1P|1|Ab|G|1147
6Z1P|1|Ab|A|1148
6Z1P|1|Ab|C|1149
6Z1P|1|Ab|A|1150
*
6Z1P|1|Ab|U|1168
6Z1P|1|Ab|C|1169
*
6Z1P|1|Ab|G|1407
6Z1P|1|Ab|A|1408
6Z1P|1|Ab|A|1409
6Z1P|1|Ab|G|1410
*
6Z1P|1|Ab|U|1728
6Z1P|1|Ab|A|1729

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain As

50S ribosomal protein L17

Chain Aw

Ribosomal protein L22/L17e