J4_6Z6J_002

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Z6J_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1293

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6Z6J|1|C1|C|185
6Z6J|1|C1|U|186
6Z6J|1|C1|A|187
6Z6J|1|C1|U|188
6Z6J|1|C1|G|189
*
6Z6J|1|C1|C|205
6Z6J|1|C1|G|206
6Z6J|1|C1|U|207
6Z6J|1|C1|C|208
*
6Z6J|1|C1|G|212
6Z6J|1|C1|A|213
6Z6J|1|C1|G|214
*
6Z6J|1|C1|C|226
6Z6J|1|C1|G|227
6Z6J|1|C1|U|228
6Z6J|1|C1|G|229
6Z6J|1|C1|U|230
6Z6J|1|C1|G|231

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A