J4_6Z6J_010

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6Z6J_010 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.1228

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6J|1|C1|U|3010
6Z6J|1|C1|A|3011
6Z6J|1|C1|A|3012
*
6Z6J|1|C1|U|3042
6Z6J|1|C1|C|3043
*
6Z6J|1|C1|G|3098
6Z6J|1|C1|C|3099
6Z6J|1|C1|U|3100
*
6Z6J|1|C1|A|3134
6Z6J|1|C1|U|3135
6Z6J|1|C1|G|3136

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A

Chain LV

60S ribosomal protein L23-A