J4_6Z6L_006

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6Z6L|1|L5|A|2366, 6Z6L|1|L5|U|2369, 6Z6L|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6L|1|L5|C|2365
6Z6L|1|L5|A|2366
6Z6L|1|L5|A|2367
6Z6L|1|L5|A|2368
6Z6L|1|L5|U|2369
6Z6L|1|L5|A|2370
6Z6L|1|L5|U|2371
*
6Z6L|1|L5|A|2389
6Z6L|1|L5|G|2390
6Z6L|1|L5|G|2391
*
6Z6L|1|L5|C|2824
6Z6L|1|L5|A|2825
6Z6L|1|L5|U|2826
6Z6L|1|L5|G|2827
6Z6L|1|L5|U|2828
6Z6L|1|L5|U|2829
*
6Z6L|1|L5|A|3856
6Z6L|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31