J4_6Z6M_004

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6Z6M|1|L5|A|2366, 6Z6M|1|L5|U|2369, 6Z6M|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|L5|C|2365
6Z6M|1|L5|A|2366
6Z6M|1|L5|A|2367
6Z6M|1|L5|A|2368
6Z6M|1|L5|U|2369
6Z6M|1|L5|A|2370
6Z6M|1|L5|U|2371
*
6Z6M|1|L5|A|2389
6Z6M|1|L5|G|2390
6Z6M|1|L5|G|2391
*
6Z6M|1|L5|C|2824
6Z6M|1|L5|A|2825
6Z6M|1|L5|U|2826
6Z6M|1|L5|G|2827
6Z6M|1|L5|U|2828
6Z6M|1|L5|U|2829
*
6Z6M|1|L5|A|3856
6Z6M|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31