J4_6ZJ3_003
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (OMC)GAGUAC*GG*CCAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6ZJ3|1|LF|G|1837, 6ZJ3|1|LF|U|1840
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZJ3_003 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.1874
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|OMC|1836
6ZJ3|1|LF|G|1837
6ZJ3|1|LF|A|1838
6ZJ3|1|LF|G|1839
6ZJ3|1|LF|U|1840
6ZJ3|1|LF|A|1841
6ZJ3|1|LF|C|1842
*
6ZJ3|1|LF|G|1889
6ZJ3|1|LF|G|1890
*
6ZJ3|1|LH|C|2334
6ZJ3|1|LH|C|2335
6ZJ3|1|LH|A|2336
6ZJ3|1|LH|C|2337
*
6ZJ3|1|LH|G|2840
6ZJ3|1|LH|G|2841
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Li
- Ribosomal protein uL22
- Chain Lt
- Ribosomal protein eL31
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