J4_6ZJ3_005
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAC(PSU)G*CC(JMH)AG*UGACU*A(OMU)CA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, JMH, OMU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZJ3_005 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1695
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LH|G|2618
6ZJ3|1|LH|A|2619
6ZJ3|1|LH|C|2620
6ZJ3|1|LH|PSU|2621
6ZJ3|1|LH|G|2622
*
6ZJ3|1|LH|C|2634
6ZJ3|1|LH|C|2635
6ZJ3|1|LH|JMH|2636
6ZJ3|1|LH|A|2637
6ZJ3|1|LH|G|2638
*
6ZJ3|1|LH|U|2674
6ZJ3|1|LH|G|2675
6ZJ3|1|LH|A|2676
6ZJ3|1|LH|C|2677
6ZJ3|1|LH|U|2678
*
6ZJ3|1|LH|A|2805
6ZJ3|1|LH|OMU|2806
6ZJ3|1|LH|C|2807
6ZJ3|1|LH|A|2808
6ZJ3|1|LH|A2M|2809
6ZJ3|1|LH|C|2810
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain L5
- Ribosomal protein eL42
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: