J4_6ZM5_013
3D structure
- PDB id
- 6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUAG*CAG*CAGAUG*CU
- Length
- 15 nucleotides
- Bulged bases
- 6ZM5|1|x|U|8, 6ZM5|1|x|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZM5_013 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.2242
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6ZM5|1|x|A|7
6ZM5|1|x|U|8
6ZM5|1|x|A|9
6ZM5|1|x|G|10
*
6ZM5|1|x|C|25
6ZM5|1|x|A|26
6ZM5|1|x|G|27
*
6ZM5|1|x|C|43
6ZM5|1|x|A|44
6ZM5|1|x|G|45
6ZM5|1|x|A|46
6ZM5|1|x|U|48
6ZM5|1|x|G|49
*
6ZM5|1|x|C|65
6ZM5|1|x|U|66
Current chains
- Chain x
- P-site tRNA
Nearby chains
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
Coloring options: