J4_6ZM7_001

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUAG*CAU*AGACC*GU

Length

14 nucleotides

Bulged bases

6ZM7|1|CC|U|8, 6ZM7|1|CC|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZM7_001 not in the Motif Atlas

Homologous match to J4_3WFS_001

Geometric discrepancy: 0.4647

The information below is about J4_3WFS_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6ZM7|1|CC|A|7
6ZM7|1|CC|U|8
6ZM7|1|CC|A|9
6ZM7|1|CC|G|10
*
6ZM7|1|CC|C|25
6ZM7|1|CC|A|26
6ZM7|1|CC|U|27
*
6ZM7|1|CC|A|44
6ZM7|1|CC|G|45
6ZM7|1|CC|A|46
6ZM7|1|CC|C|47
6ZM7|1|CC|C|48
*
6ZM7|1|CC|G|64
6ZM7|1|CC|U|65

Current chains

Chain CC

tRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain Lo

60S ribosomal protein L36a