J4_6ZM7_005

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6ZM7|1|L5|A|2366, 6ZM7|1|L5|U|2369, 6ZM7|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZM7|1|L5|C|2365
6ZM7|1|L5|A|2366
6ZM7|1|L5|A|2367
6ZM7|1|L5|A|2368
6ZM7|1|L5|U|2369
6ZM7|1|L5|A|2370
6ZM7|1|L5|U|2371
*
6ZM7|1|L5|A|2389
6ZM7|1|L5|G|2390
6ZM7|1|L5|G|2391
*
6ZM7|1|L5|C|2824
6ZM7|1|L5|A|2825
6ZM7|1|L5|U|2826
6ZM7|1|L5|G|2827
6ZM7|1|L5|U|2828
6ZM7|1|L5|U|2829
*
6ZM7|1|L5|A|3856
6ZM7|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31