J4_6ZME_006

3D structure

PDB id

6ZME (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6ZME|1|L5|A|2366, 6ZME|1|L5|U|2369, 6ZME|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZME|1|L5|C|2365
6ZME|1|L5|A|2366
6ZME|1|L5|A|2367
6ZME|1|L5|A|2368
6ZME|1|L5|U|2369
6ZME|1|L5|A|2370
6ZME|1|L5|U|2371
*
6ZME|1|L5|A|2389
6ZME|1|L5|G|2390
6ZME|1|L5|G|2391
*
6ZME|1|L5|C|2824
6ZME|1|L5|A|2825
6ZME|1|L5|U|2826
6ZME|1|L5|G|2827
6ZME|1|L5|U|2828
6ZME|1|L5|U|2829
*
6ZME|1|L5|A|3856
6ZME|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31