3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CAAAUAU*AGG*CAUGUU*AG
Length
18 nucleotides
Bulged bases
6ZMI|1|L5|A|2366, 6ZMI|1|L5|U|2369, 6ZMI|1|L5|U|2828
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZMI|1|L5|C|2365
6ZMI|1|L5|A|2366
6ZMI|1|L5|A|2367
6ZMI|1|L5|A|2368
6ZMI|1|L5|U|2369
6ZMI|1|L5|A|2370
6ZMI|1|L5|U|2371
*
6ZMI|1|L5|A|2389
6ZMI|1|L5|G|2390
6ZMI|1|L5|G|2391
*
6ZMI|1|L5|C|2824
6ZMI|1|L5|A|2825
6ZMI|1|L5|U|2826
6ZMI|1|L5|G|2827
6ZMI|1|L5|U|2828
6ZMI|1|L5|U|2829
*
6ZMI|1|L5|A|3856
6ZMI|1|L5|G|3857

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ld
60S ribosomal protein L31

Coloring options:

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