J4_6ZMO_006

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6ZMO|1|L5|A|2366, 6ZMO|1|L5|U|2369, 6ZMO|1|L5|A|2370, 6ZMO|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZMO|1|L5|C|2365
6ZMO|1|L5|A|2366
6ZMO|1|L5|A|2367
6ZMO|1|L5|A|2368
6ZMO|1|L5|U|2369
6ZMO|1|L5|A|2370
6ZMO|1|L5|U|2371
*
6ZMO|1|L5|A|2389
6ZMO|1|L5|G|2390
6ZMO|1|L5|G|2391
*
6ZMO|1|L5|C|2824
6ZMO|1|L5|A|2825
6ZMO|1|L5|U|2826
6ZMO|1|L5|G|2827
6ZMO|1|L5|U|2828
6ZMO|1|L5|U|2829
*
6ZMO|1|L5|A|3856
6ZMO|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31