J4_6ZMW_002

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAG*CGAAAG*CCA(PSU)AAACGAUG*UU

Length

23 nucleotides

Bulged bases

6ZMW|1|A|A|672, 6ZMW|1|A|A|1083, 6ZMW|1|A|C|1085, 6ZMW|1|A|A|1087

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZMW_002 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.1211

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6ZMW|1|A|A|671
6ZMW|1|A|A|672
6ZMW|1|A|G|673
*
6ZMW|1|A|C|1032
6ZMW|1|A|G|1033
6ZMW|1|A|A|1034
6ZMW|1|A|A|1035
6ZMW|1|A|A|1036
6ZMW|1|A|G|1037
*
6ZMW|1|A|C|1078
6ZMW|1|A|C|1079
6ZMW|1|A|A|1080
6ZMW|1|A|PSU|1081
6ZMW|1|A|A|1082
6ZMW|1|A|A|1083
6ZMW|1|A|A|1084
6ZMW|1|A|C|1085
6ZMW|1|A|G|1086
6ZMW|1|A|A|1087
6ZMW|1|A|U|1088
6ZMW|1|A|G|1089
*
6ZMW|1|A|U|1160
6ZMW|1|A|U|1161

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain B

40S ribosomal protein S11

Chain E

40S ribosomal protein S23

Chain I

40S ribosomal protein S13

Chain J

40S ribosomal protein S15a

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26

Chain y

Eukaryotic translation initiation factor 3 subunit C