J4_6ZOK_002
3D structure
- PDB id
- 6ZOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, focused on body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6ZOK|1|2|A|672, 6ZOK|1|2|A|1083, 6ZOK|1|2|C|1085, 6ZOK|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ZOK_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0799
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZOK|1|2|A|671
6ZOK|1|2|A|672
6ZOK|1|2|G|673
*
6ZOK|1|2|C|1032
6ZOK|1|2|G|1033
6ZOK|1|2|A|1034
6ZOK|1|2|A|1035
6ZOK|1|2|A|1036
6ZOK|1|2|G|1037
*
6ZOK|1|2|C|1078
6ZOK|1|2|C|1079
6ZOK|1|2|A|1080
6ZOK|1|2|U|1081
6ZOK|1|2|A|1082
6ZOK|1|2|A|1083
6ZOK|1|2|A|1084
6ZOK|1|2|C|1085
6ZOK|1|2|G|1086
6ZOK|1|2|A|1087
6ZOK|1|2|U|1088
6ZOK|1|2|G|1089
*
6ZOK|1|2|U|1160
6ZOK|1|2|U|1161
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S11
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14
- Chain W
- 40S ribosomal protein S15a
- Chain X
- 40S ribosomal protein S23
- Chain a
- 40S ribosomal protein S26
- Chain h
- 60S ribosomal protein L41
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