J4_6ZTJ_001

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6ZTJ|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ZTJ_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2678

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZTJ|1|AA|G|115
6ZTJ|1|AA|A|116
6ZTJ|1|AA|G|117
6ZTJ|1|AA|U|118
6ZTJ|1|AA|A|119
6ZTJ|1|AA|A|120
6ZTJ|1|AA|U|121
6ZTJ|1|AA|G|122
*
6ZTJ|1|AA|U|239
6ZTJ|1|AA|G|240
*
6ZTJ|1|AA|C|286
6ZTJ|1|AA|U|287
6ZTJ|1|AA|A|288
6ZTJ|1|AA|G|289
*
6ZTJ|1|AA|C|311
6ZTJ|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17