3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
6ZTJ|1|AA|C|183, 6ZTJ|1|AA|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ZTJ_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1171
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6ZTJ|1|AA|G|142
6ZTJ|1|AA|A|143
6ZTJ|1|AA|G|144
*
6ZTJ|1|AA|C|178
6ZTJ|1|AA|A|179
6ZTJ|1|AA|U|180
6ZTJ|1|AA|A|181
6ZTJ|1|AA|A|182
6ZTJ|1|AA|C|183
6ZTJ|1|AA|G|184
*
6ZTJ|1|AA|C|193
6ZTJ|1|AA|C|194
6ZTJ|1|AA|A|195
6ZTJ|1|AA|A|196
6ZTJ|1|AA|A|197
6ZTJ|1|AA|G|198
*
6ZTJ|1|AA|U|219
6ZTJ|1|AA|G|220
6ZTJ|1|AA|C|221

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AT
30S ribosomal protein S20

Coloring options:


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